Archive for February, 2008

Analogy Machine Example

Sunday, February 24th, 2008

Start with Categories, end with Nuanced Vision

General Description:

In a vacuum of knowledge about the underlying causes of phenomena one sees, the first thing one can do to understand the phenomenon is to categorize the phenomena themselves. When a scientist groups phenomenon into categories, he may be leading himself astray - the categories may or may not have anything to do with the underlying causes. Nonetheless, the sharper and more precise the categories, the closer they may become to reflecting causes.

When these categories are in error, they are discarded outright when a sharper view of the science emerges. When these categories have merit, they still tend to take the sideline when they lose their importance. In either case, they mysteriously still get taught in elementary school.

Example:

Taxonomy (categorization of the phenomenon of biodiversity) vs. phylogeny (the evolutionary origins of biodiversity). Biologists in near pre-evolutionary times were already quite good at categorizing species based on their physiology. By the time Darwin’s On the Origin of the Species was published, they have long since discarded classification systems such as flying, land, sea or useful, dangerous, harmless or other such nonsense in favor of Linnaean Taxonomy, which reflected the best of their knowledge of the day.

Some of Linnaeus’ categories did represent true evolutionary relationships. This is because he was so careful to categorize based on morphological similarities. Some things were, of course, wrong, too. Cases of convergent evolution naturally created false positives for category matches. Paleontology did much to correct the taxonomy since Linnaeus’ time, and molecular data, more still. Now, the system itself still suffers from not correctly reflecting the underlying causes of biodiversity - there are still many paraphyletic clades (unless you want to deem birds reptiles, for example). And, the classifications highlight the sections of biodiversity we were most familiar with before the invention of the microscope, and that is but a tiny representation of one of the major clades!

So, even though Linnaean taxonomy is at the verge of being discarded outright for strict cladistics, the taxonomy itself proved quite useful in telling us where to look. Why do mammals all have such similar limbs? Such similar embryology? These questions lead to the biology we have today, and a frustrated purist who would reject early attempts at classification as simply imposing a librarian’s order on a chaotic universe would have done nothing to help a fledgling science. Oh, and the “kingdoms” are quite easy for school children to grasp.

Some More Examples:

  • Schizophrenias are still numerous (you may recognize some - paranoid, disorganized, delusional, hey, that sounds like half of my friends! just kidding, friends!), and there’s no agreement what the types are, if there really are types, or if the different types even represent the same disease. Surely the most difficult thing for the human mind to grasp is the human mind.
  • Speaking of phylogeny and genes, a good start for understanding physical anthropology was races. When the categorization was based on skull shape, not other things like skin color, it was closest to representing human history, since skull characteristics are among the least affected by natural selection. Some of the categorizations back in the 1800s were close to right, but molecular data has relegated “race” to a very minor role, if any, in describing populations.
  • Quantum theory describes a good number of quantum particles. We only know how these particles act. It very well could be that none of these exist as distinct types of particles, as some attempts at quantum field theory might suggest.

Application:

An ambitious scientist would be half-right be be suspicious of a young science’s obsession with categorization. But he should be cautiously optimistic about more and more detailed classification (read: observation) while striving for something that points to a fundamental cause. Oh, but scientists already know about all this. What can you, the non-scientist glean from this? One day, you are telling your friend over a drink “there are X types of people in this world…” and proceeding to bitch about your X, and the next, you develop a Mark Twain-esque understanding of human nature.

Be satisfied with solid observation at first, and even indulge yourself with your atavistic desire to categorize if you must. But from there, learn the underlying causes, the essential nature of things, the ways in which the categories are an illusion, or at least but a small puzzle piece.

One more thing about Mac OS X keyboard suckiness

Sunday, February 24th, 2008

…they hijack the F keys. I like having a volume key, etc., but why can’t that be additional keys? F5 is refresh! kuh

Earlier Post:
Mac OS X vs. My Keyboard

The Low-Hanging Fruits of Fiscally Conservative (Economically Liberal) Environmentalism

Thursday, February 21st, 2008

Here are some of the more obvious things that could help combat global environmental crises like global warming in a way that doesn’t crush individual economic liberties or doesn’t increase state control of the economy. This is all leading up to something. You’ll notice that for many of these, it’s simply a case of the cost of something not reflecting the environmental cost, due to marketing controls.

Of course, the ones of these that are both obvious and easy do get implemented - slowly. Green Scissors has their influence, but that only gets the really low-hanging fruits. I’d like to see leadership in the executive branch have the gonads to implement the obvious, but politically suicidal (particularly #2!).

I’m naturally more interested in the not-so-low-hanging fruits, but that’s the subject of past (and future!) blog posts.

  1. End farm subsidies. They are the reason alfalfa is grown in the desert and meat is cheap. They only help the richest farmers, anyway.
  2. Stop making gas cheap. End subsidies for gas, oil. The government fights the creeping “problem” of gas being expensive. There are many, many creative folks working on alternatives to hydrocarbons, yet here we are artificially reducing the demand for their work.
  3. Make national parks, state recreation areas, etc. pay for themselves. Wild nature is a scarce resource. Charge for it. There is an opportunity cost in keeping these lands, and it costs money to clean up after the homo sapiens. For this matter, private corporations can do the same thing! It is unlikely a nature-enjoyment use of a land will win out against more exploitative uses in the free market often enough to preserve biodiversity, but stranger things happen (like churches being rich!) and rigging the game slightly in favor of such entities would be much less statist than so many other proposed measures…
  4. Big business, trade unions are forces to be reckoned with. Though they may temporarily work to protect the environment, they are more often foes. The government needn’t (and shouldn’t) oppress these entities, but it can stop giving them unchecked political power that isn’t afforded any individual human. If asked to donate to a club the whales fund, I think you’re answer would be “pshaw!”, yet that corporation you own stock in, or that union you’re in, may lobby time and again against your wishes - without asking you once! Businesses and trade unions’ lobbying limbs exist to maintain status quo - but status quo is precisely the cause of our troubles, no?
  5. Lower taxes. More money to donate to the Nature Conservancy. When people pay less in taxes, they donate to charitable causes, and some are bound to be environmental. Land-grabbing orgs large and small do much more using less, than the federal government.
  6. Let the private sector feed the poor. Poorige is good for you and lower on the food chain. And, it’s cheaper (unless the government artificially makes foods higher in the food chain cheaper, which they do). Food stamps give you the power to buy the laziest foods, which also require the most industrial processing. Poor people have time on their hands, not money. Let them have potatoes, not potato chips. Oh, yes, and population growth is a doozy and when you must choose between feeding yourself or having a child who will stave, just maybe you might choose the former.
  7. Enforce property rights. An industry doesn’t have any special rights to pollute my property.
  8. and much more…

Recitation, section 1

Sunday, February 17th, 2008

I’ll be posting my homework on my blog, so the internet can be my professor! Since the recitations are supposed to be oral, I’ll be posting my recitations in video. Read below (or click more..) to see answers & video. I also attached the answer key so you can compare the professor’s answers to mine. (more…)

ᛏᚢ ᛗᚪᛁ ᛖᚳᛋ

Tuesday, February 12th, 2008

ᚦᛖ ᚻᚪᚱᛏ ᚩᚠ ᚦᛖ ᛗᚫᛏᚱ
ᛞᚪᚾ ᚻᛖᚾᛚᛁ

ᛟ ᚷᚪᛏ ᚦᛖ ᚳᚪᛚ ᛏᚢᛞᛖᛖ ᛫ ᛟ ᛞᛁᛞᚾᛏ ᚹᚪᚾᚪ ᚻᛁᚱ
ᛒᚢᛏ ᛟ ᚾᚢ ᚦᚫᛏ ᛁᛏ ᚹᚢᛞ ᛣᚢᛗ
ᚫᚾ ᚩᛚᛞ ᛏᚱᚢ ᚠᚱᛖᚾᛞ ᚩᚠ ᚪᚱᛋ ᚹᚪᛋ ᛏᚪᛣᛁᛝ ᚪᚾ ᚦᛖ ᚠᚩᚾ
ᛋᚳᛁ ᛋᛖᛞ ᛄᚢ ᚠᚫᚩᚾᛞ ᛋᚩᛗᚹᚩᚾ
ᚫᚾᛞ ᛟ ᚦᚪᛏ ᚩᚠ ᚪᛚ ᚦᛖ ᛒᚫᛞ ᛚᚢᛣ
ᚫᚾᛞ ᚦᛖ ᛋᛏᚱᚢᚷᛚᛋ ᚹᛁ ᚹᛖᚾᛏ ᚦᚱᚢ
ᚫᚾᛞ ᚻᚫᚩ ᛟ ᛚᚪᛋᛏ ᛗᛁ ᚫᚾᛞ ᛄᚢ ᛚᚪᛋᛏ ᛄᚢ
ᚹᚪᛏ ᚪᚱ ᚦᛁᛋ ᚠᚩᛁᛋᛖᛋ ᚫᚩᛏᛋᛟᛞ ᛚᚢᚠᛋ ᚩᛈᛖᚾ ᛞᚩᚱ
ᛗᛖᛖᛣ ᚢᛋ ᚦᚱᚩ ᚪᚠ ᚪᚱ ᛣᚢᚾᛏᛖᚾᛏᛗᛖᚾᛏ
ᚫᚾᛞ ᛒᛖᚷ ᚠᚩᚱ ᛋᚢᛗᚦᛁᛝ ᛗᚩᚱ?

ᛟ’ᛗ ᛚᚱᚾᛁᛝ ᛏᚢ ᛚᛁᚠ ᚹᛁᚦᚫᚩᛏ ᛄᚢ ᚾᚫᚩ
ᛒᚢᛏ ᛟ ᛗᛁᛋ ᛄᚢ ᛋᚢᛗᛏᛟᛗᛋ
ᚦᛖ ᛗᚩᚱ ᛟ ᚾᚩ᛭ᚦᛖ ᛚᛖᛋ ᛟ ᚢᚾᛞᚱᛋᛏᚫᚾᛞ
ᚪᛚ ᚦᛖ ᚦᛁᛝᛋ ᛟ ᚦᛟᛏ ᛁ ᚾᚢ᛭ᛁ’ᛗ ᛚᚱᚾᛁᛝ ᚪᚷᛖᚾ
ᛁ’ᚠ ᛒᛖᚾ ᛏᚱᛟᛁᛝ ᛏᚢ ᚷᛖᛏ ᛞᚫᚩᚾ᛭ᛏᚢ ᚦᛖ ᚻᚪᚱᛏ ᚩᚠ ᚦᛖ ᛗᚫᛏᚱ
ᛒᚢᛏ ᛗᛟ ᚹᛁᛚ ᚷᛖᛏᛋ ᚹᛁᛣ
ᚫᚾᛞ ᛗᛟ ᚦᚩᛏᛋ ᛋᛁᛗ ᛏᚢ ᛋᚳᚫᛏᚱ
ᛒᚢᛏ ᛟ ᚦᛁᛝᛣ ᛁᛏᛋ ᛖᛒᚫᚩᛏ ᚠᚩᚱᚷᛁᚠᚾᛖᛋ
ᚠᛟᚱᚷᛁᚠᚾᛖᛋ
ᛁᚠᛖᚾ ᛁᚠ ᛁᚠᛖᚾ ᛁᚠ ᛄᚢ ᛞᚩᚾᛏ ᛚᚩᚠ ᛗᛁ ᛖᚾᛁᛗᚩᚱ

ᚦᛁᛋ ᛏᛟᛗᛋ ᚪᚱ ᛋᚩ ᚢᚾᛋᚱᛏᛖᚾ
ᚦᛖᚱᛋ ᛖᛖ ᛄᚱᚾᛁᛝ ᚢᚾᛞᛁᚠᛟᚾᛞ
ᛈᛁᛈᛚ ᚠᛁᛚᛞ ᚹᛁᚦ ᚱᛖᛖᚸ
ᚹᛁ ᚪᛚ ᚾᛁᛞ ᛖᛖ ᛚᛁᛏᛚ ᛏᛖᚾᛞᚱᚾᛁᛋ
ᚻᛟ ᚳᚫᚾ ᛚᚢᚠ ᛋᚱᚠᛟᚠ ᛁᚾ ᛋᚢᚳ ᛖᛖ ᚷᚱᛖᛖᛋᛚᛖᛋ ᛖᛖᚸ
ᚦᛖ ᛏᚱᚢᛋᛏ ᚫᚾᛞ ᛋᛖᛚᚠᚫᛋᛄᚢᚱᛖᚾᛋ ᚦᚫᛏ ᚳᚫᚾ ᛚᛁᛞ ᛏᚢ ᚻᚫᛈᛁᚾᛖᛋ
ᚦᛖᛖᚱ ᚦᛖ ᚠᛖᚱᛁ ᚦᛁᛝᛋ ᚹᛁ ᛣᛁᛚ ᛟ ᚷᛖᛋ
ᛈᚱᛟᛞ ᚫᚾᛞ ᚳᚩᛗᚪᛗᛈᛖᛏᛁᛋᚳᚩᚾ ᚳᚫᚾᚩᛏ ᚠᛁᛚ ᚦᛁᛋ ᛖᛗᛈᛏᛁ ᚪᚱᛗᛋ
ᚫᚾᛞ ᚦᛖ ᚹᚱᛣ ᛟ ᛈᚢᛏ ᛒᛁᛏᚹᛁᛁᚾ ᚢᛋ
ᛞᚢᛋᚾᛏ ᛣᛁᛈ ᛗᛁ ᚹᚩᚱᛗ

ᛟ’ᛗ ᛚᚱᚾᛁᛝ ᛏᚢ ᛚᛁᚠ ᚹᛁᚦᚫᚩᛏ ᛇ ᚾᚫᚩ
ᛒᚢᛏ ᛟ ᛗᛁᛋ ᛇ ᛒᛖᛖᛒᛁ
ᚦᛖ ᛗᚩᚱ ᛟ ᚾᚩ ᚦᛖ ᛚᛖᛋ ᛟ ᚢᚾᛞᚱᛋᛏᚫᚾᛞ
ᚪᛚ ᚦᛖ ᚦᛁᛝᛋ ᛟ ᚦᚩᛏ ᛟ ᚠᛁᚷᛇᚱᛞ ᚫᚩᛏ᛫ᛟ ᚻᚫᚠ ᛏᚢ ᛚᚱᚾ ᛖᚷᛖᚾ
ᛟ’ᚠ ᛒᛖᚾ ᛏᚱᛟᛁᛝ ᛏᚢ ᚷᛖᛏ ᛞᚫᚩᚾ ᛏᚢ ᚦᛖ ᚻᚪᚱᛏ ᚩᚠ ᚦᛖ ᛗᚫᛏᚱ
ᛒᚢᛏ ᛖᚠᚱᛁᚦᛁᛝ ᚳᛖᚾᚸᛖᛋ ᚫᚾᛞ ᛗᛟ ᚠᚱᛖᚾᛞᛋ ᛋᛁᛗ ᛏᚢ ᛋᚳᚫᛏᚱ
ᛒᚢᛏ ᛟ ᚦᛁᚾᛣ ᛁᛏᛋ ᛖᛒᚫᚩᛏ ᚠᚩᚱᚷᛁᚠᚾᛖᛋ
ᚠᚩᚱᚷᛁᚠᚾᛖᛋ
ᛁᚠᛖᚾ ᛁᚠ ᛖᚠᛖᚾ ᛁᚠ ᛄᚢ ᛞᚩᚾᛏ ᛚᚩᚠ ᛗᛁ ᛖᚾᛁᛗᚩᚱ

ᛟᚠ ᛒᛖᚾ ᛏᚱᛟᛁᛝ ᛏᚢ ᚷᛖᛏ ᛞᚫᚩᚾ ᛏᚢ ᚦᛖ ᚻᚪᚱᛏ ᚩᚠ ᚦᛖ ᛗᚫᛏᚱ
ᛒᛁᚳᚢᛋ ᚦᛖ ᚠᛚᛖᛋᚳ ᚹᛁᛚ ᚷᛖᛏ ᚹᛁᛣ
ᚫᚾᛞ ᚦᛖ ᚫᛋᚳᛖᛋ ᚹᛁᛚ ᛋᛣᚫᛏᚱ
ᛋᚩ ᛟ’ᛗ ᚦᛁᛝᛣᛁᚾ ᛖᛒᚫᚩᛏ ᚠᚩᚱᚷᛁᚠᚾᛖᛋ
ᚠᚩᚱᚷᛁᚠᚾᛖᛋ
ᛁᚠᛖᚾ ᛁᚠ ᛁᚠᛖᚾ ᛁᚠ ᛄᚢ ᛞᚩᚾᛏ ᛚᚢᚠ ᛗᛁ ᛖᚾᛁᛗᚩᚱ

Gay Communist Gun Club

Saturday, February 9th, 2008

Gay Communist Gun Club

Good SNL skit.. and has relevance to my earlier post on the true political parties. Are the main political parties gay communist gun clubs? Indeed…

Simple Syllabus for Intro to Biology

Wednesday, February 6th, 2008

For me, the ends of education is to learn - get new opportunities or at least exercise your brain; the degree is secondary (though I do seek a PhD eventually.. just my BS suits me just fine for now). So for me, MIT’s opencourse initiative is perfect! You can take classes from MIT for free! But.. sans the instructor (oh, but this course has videos, so it’s like he’s right there on my iPod mini). That’s where PhD friends and relatives come in handy, heh.

Anyway, I made this spreadsheet for myself for Biology 7.014, which is the basic Biology course for Biology majors. Just go down the list, and do the assignments and watch the lectures.. Then, try to discover something yourself..

Biology 7.014 Syllabus (.ods)
Biology 7.014 Syllabus (.pdf)
Biology 7.014 Syllabus (.xls)

(And no, it hasn’t escaped me that the file extension for Opendocument Spreadsheet looks like “odious”)

Here’s the course itself. I can’t believe no one else is taking advantage of this!!

http://ocw.mit.edu/OcwWeb/Biology/7-014Spring-2005/CourseHome/index.htm

Technology and Categories

Tuesday, February 5th, 2008

This morning, the dishwasher pissed me off. For the quadrillionth time, a spoon’s handle fell through one of the .5cm2 squares put in the silverware basket so water (and dirt) could move freely about. Generally, dirt is smaller and dishes are larger, but the mesh couldn’t eliminate the possibility of utensil handles falling through without also trapping larger chunks, “cleaning” utensils in a sort of sanitized crap-pool.

The mind thinks in categories, or discreet entities. The world exists as no such thing, and we make technology to sort out the difference - to find a physical existence of our social categories. We don’t want the unclean on our silverware. Unclean is generally small pieces. We don’t want mosquitoes in our ponds - critters that need still water with no oil slick on the surface. Oh, but dragonflies are so nifty. Turnips are edible and easy to grow - keep ‘em. Dandelions are edible and easy to grow - kill it! (seriously, why?) Only a robot with my brain can truly know what I want growing in my garden.

Here is one problem of the modern world - children grow up believing categories have a physical existence that do not because technology is advanced enough to sort it out most of the time. Only when children are exposed to wild nature, if just for short spans of time (like camping), can their minds truly grow.

Speeding and Project Management

Tuesday, February 5th, 2008

If you speed driving somewhere, you will get there slightly quicker. In any event, of all the things you must do to get there, it’s the one you have the least power to improve (all the more reason “I was caught in traffic” is a lame excuse for being late). You have much more control over that project you were finishing at the last minute before you left, causing you to speed. Or when you woke up.

Swerving around and traffic like a hummingbird through a flowered thicket brings your driving time from 50 minutes down to 45 minutes - congratulations. Or, you could spend just 10 minutes weeding out unnecessary parts of your power point outline, saving you an hour of preparation! (”whew, I don’t have to track down a picture of an Uzbek wedding celebration!”)

My self-study Bio Course..

Saturday, February 2nd, 2008

7.014 Introductory Biology
7.03 Genetics
7.05 General Biochemistry (open courseware doesn’t have this yet! shit)
7.06 Cell Biology

5.111 Principles of Chemical Science
5.12 Organic Chemistry I
20.110J Thermodynamics of Biomolecular Systems

7.02 Experimental Biology & Communications
7.13 Experimental Microbial Genetics
7.17 Experimental Molecular Biology: Biotechnology III (bastards don’t have this yet either..)
7.18 Topics in Experimental Biology

The 3 elective courses yet to be decided, but then again, I do not plan on doing my education entirely this way. Just a couple of classes tops would be ideal. My path will probably go 7.014 -> 7.02 -> try to do my own experimental study -> start at brick & mortar institution. If I do do things this way, then I will need to score very well on the appropriate tests for entry for MS in bioscience and convince people that good self-study + BS in unrelated field should satisfy them…